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Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W

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dc.contributor Казанский федеральный университет
dc.contributor.author Gogoleva Natalia Evgenevna
dc.contributor.author Nikolajchik Evgenij Arturovich
dc.contributor.author Ismailov Timur Tolyatovich
dc.contributor.author Gorshkov Vladimir Yurievich
dc.contributor.author Safronova Vera Igorevna
dc.contributor.author Belimov Andrej Alekseevich
dc.contributor.author Gogolev Jurij Viktorovich
dc.date.accessioned 2019-05-31T10:11:39Z
dc.date.available 2019-05-31T10:11:39Z
dc.date.issued 2019
dc.identifier.citation Gogoleva N.E. Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W / N.E. Gogoleva, Y.A. Nikolaichik, T.T. Ismailov, V.Y. Gorshkov, V.I. Safronova, A.A. Belimov, Y.V. Gogolev // 3 Biotech. - 2019. - 9(94)/
dc.identifier.uri https://dspace.kpfu.ru/xmlui/handle/net/150867
dc.description.abstract The phytohormone abscisic acid (ABA) plays multiple roles in plant survival and fitness. Significant quantities of ABA are constantly introduced into soil via root exudation, root turnover and incorporation of abscised shoot tissues. In addition, some phytopathogenic fungi synthesize ABA in the course of plant-microbe interactions. The accumulation of soil ABA can inhibit seed germination and root growth but despite this observation, the biochemical pathways of ABA conversion by microorganisms and genetic determinants of the process remain unknown. Here we report on the complete genome sequence of strain P6W, an ABA-utilizing isolate of the genus Novosphingobium. Strain P6W was isolated from the rhizosphere of rice (Oryza sativa L.) seedlings using a selective ABA-supplemented medium. The genome of strain P6W consists of 6,606,532 bp, which includes two chromosomes and two plasmids. It comprises of 5663 protein-coding genes and 80 RNA genes. ANI values calculated based on the analysis of nine previously sequenced genomes of members of the genus Novosphingobium ranged from 77 to 92 %, which suggests that strain P6W is potentially a new species of the genus Novosphingobium. Functional annotation of genes in the genome of strain P6W revealed a number genes that could be potentially responsible for ABA degradation.
dc.language.iso en
dc.relation.ispartofseries 3 Biotech
dc.rights открытый доступ
dc.subject Abscisic acid
dc.subject Novosphingobium
dc.subject complete genome sequence
dc.subject rhizosphere
dc.subject plant-microbe interactions
dc.subject.other Биология
dc.title Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W
dc.type Article
dc.contributor.org Институт фундаментальной медицины и биологии
dc.description.pages 1-8
dc.relation.ispartofseries-volume 9
dc.pub-id 202698
dc.identifier.doi 10.1007/s13205-019-1625-8


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