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Просмотр Публикации сотрудников КФУ Scopus по автору "Deviatiiarov R."

Просмотр Публикации сотрудников КФУ Scopus по автору "Deviatiiarov R."

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  • An integrated expression atlas of miRNAs and their promoters in human and mouse 
    De Rie D.; Abugessaisa I.; Alam T.; Arner E.; Arner P.; Ashoor H.; Åström G.; Babina M.; Bertin N.; Burroughs A.; Carlisle A.; Daub C.; Detmar M.; Deviatiiarov R.; Fort A.; Gebhard C.; Goldowitz D.; Guhl S.; Ha T.; Harshbarger J.; Hasegawa A.; Hashimoto K.; Herlyn M.; Heutink P.; Hitchens K.; Hon C.; Huang E.; Ishizu Y.; Kai C.; Kasukawa T.; Klinken P.; Lassmann T.; Lecellier C.; Lee W.; Lizio M.; Makeev V.; Mathelier A.; Medvedeva Y.; Mejhert N.; Mungall C.; Noma S.; Ohshima M.; Okada-Hatakeyama M.; Persson H.; Rizzu P.; Roudnicky F.; Sætrom P.; Sato H.; Severin J.; Shin J.; Swoboda R.; Tarui H.; Toyoda H.; Vitting-Seerup K.; Winteringham L.; Yamaguchi Y.; Yasuzawa K.; Yoneda M.; Yumoto N.; Zabierowski S.; Zhang P.; Wells C.; Summers K.; Kawaji H.; Sandelin A.; Rehli M.; Hayashizaki Y. (2017)
    © 2017 Nature America, Inc., part of Springer Nature. MicroRNAs (miRNAs) are short non-coding RNAs with key roles in cellular regulation. As part of the fifth edition of the Functional Annotation of Mammalian Genome (FANTOM5) ...
  • Application of a CAGE method to an avian development study 
    Deviatiiarov R.; Lizio M.; Gusev O. (2017)
    © Springer Science+Business Media LLC 2017. Cap analysis of gene expression (CAGE) is a convenient approach for genome-wide identification of promoter regions at single base-pair resolution level and accurate expression ...
  • Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells 
    Miyata Y.; Fuse H.; Tokumoto S.; Hiki Y.; Deviatiiarov R.; Yoshida Y.; Yamada T.G.; Cornette R.; Gusev O.; Shagimardanova E.; Funahashi A.; Kikawada T. (2021)
    Pv11 is an insect cell line established from the midge Polypedilum vanderplanki, whose larval form exhibits an extreme desiccation tolerance known as anhydrobiosis. Pv11 itself is also capable of anhydrobiosis, which is ...
  • Development of a tet-on inducible expression system for the anhydrobiotic cell line, PV11 
    Tokumoto S.; Miyata Y.; Usui K.; Deviatiiarov R.; Ohkawa T.; Kondratieva S.; Shagimardanova E.; Gusev O.; Cornette R.; Itoh M.; Hayashizaki Y.; Kikawada T. (2020)
    © 2020 by the authors. Licensee MDPI, Basel, Switzerland. The Pv11 cell line established from an African chironomid, Polypedilum vanderplanki, is the only cell line tolerant to complete desiccation. In Pv11 cells, a ...
  • Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network 
    Grapotte M.; Saraswat M.; Bessière C.; Menichelli C.; Ramilowski J.A.; Severin J.; Hayashizaki Y.; Itoh M.; Tagami M.; Murata M.; Kojima-Ishiyama M.; Noma S.; Noguchi S.; Kasukawa T.; Hasegawa A.; Suzuki H.; Nishiyori-Sueki H.; Frith M.C.; Abugessaisa I.; Aitken S.; Aken B.L.; Alam I.; Alam T.; Alasiri R.; Alhendi A.M.N.; Alinejad-Rokny H.; Alvarez M.J.; Andersson R.; Arakawa T.; Araki M.; Arbel T.; Archer J.; Archibald A.L.; Arner E.; Arner P.; Asai K.; Ashoor H.; Astrom G.; Babina M.; Baillie J.K.; Bajic V.B.; Bajpai A.; Baker S.; Baldarelli R.M.; Balic A.; Bansal M.; Batagov A.O.; Batzoglou S.; Beckhouse A.G.; Beltrami A.P.; Beltrami C.A.; Bertin N.; Bhattacharya S.; Bickel P.J.; Blake J.A.; Blanchette M.; Bodega B.; Bonetti A.; Bono H.; Bornholdt J.; Bttcher M.; Bougouffa S.; Boyd M.; Breda J.; Brombacher F.; Brown J.B.; Bult C.J.; Burroughs A.M.; Burt D.W.; Busch A.; Caglio G.; Califano A.; Cameron C.J.; Cannistraci C.V.; Carbone A.; Carlisle A.J.; Carninci P.; Carter K.W.; Cesselli D.; Chang J.C.; Chen J.C.; Chen Y.; Chierici M.; Christodoulou J.; Ciani Y.; Clark E.L.; Coskun M.; Dalby M.; Dalla E.; Daub C.O.; Davis C.A.; de Hoon M.J.L.; de Rie D.; Denisenko E.; Deplancke B.; Detmar M.; Deviatiiarov R.; Di Bernardo D.; Diehl A.D.; Dieterich L.C. (2021)
    Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of the most comprehensive maps of transcription start sites (TSSs) in several species. Strikingly, ~72% of them could not be ...
  • Diversity and regulation of S-adenosylmethionine dependent methyltransferases in the anhydrobiotic midge 
    Deviatiiarov R.; Ayupov R.; Laikov A.; Shagimardanova E.; Kikawada T.; Gusev O. (2020)
    © 2020 by the authors. Licensee MDPI, Basel, Switzerland. Multiple co-localized paralogs of genes in Polypedilum vanderplanki’s genome have strong transcriptional response to dehydration and considered to be a part of ...
  • Genetic algorithm-based personalized models of human cardiac action potential 
    Smirnov D.; Pikunov A.; Syunyaev R.; Deviatiiarov R.; Gusev O.; Aras K.; Gams A.; Koppel A.; Efimov I.R. (2020)
    © 2020 Smirnov et al. We present a novel modification of genetic algorithm (GA) which determines personalized parameters of cardiomyocyte electrophysiology model based on set of experimental human action potential (AP) ...
  • Genome-wide role of hsf1 in transcriptional regulation of desiccation tolerance in the anhydrobiotic cell line, pv11 
    Tokumoto S.; Miyata Y.; Deviatiiarov R.; Yamada T.G.; Hiki Y.; Kozlova O.; Yoshida Y.; Cornette R.; Funahashi A.; Shagimardanova E.; Gusev O.; Kikawada T. (2021)
    The Pv11, an insect cell line established from the midge Polypedilum vanderplanki, is capa-ble of extreme hypometabolic desiccation tolerance, so-called anhydrobiosis. We previously discov-ered that heat shock factor 1 ...
  • Identification of a novel strong promoter from the anhydrobiotic midge, Polypedilum vanderplanki, with conserved function in various insect cell lines 
    Miyata Y.; Tokumoto S.; Sogame Y.; Deviatiiarov R.; Okada J.; Cornette R.; Gusev O.; Shagimardanova E.; Sakurai M.; Kikawada T. (2019)
    © 2019, The Author(s). Larvae of the African midge Polypedilum vanderplanki (Diptera: Chironomidae) show a form of extreme desiccation tolerance known as anhydrobiosis. The cell line Pv11 was recently established from the ...
  • Integrative transcription start site analysis and physiological phenotyping reveal torpor-specific expression program in mouse skeletal muscle 
    Deviatiiarov R.; Ishikawa K.; Gazizova G.; Abe T.; Kiyonari H.; Takahashi M.; Gusev O.; Sunagawa G.A. (2021)
    Mice enter an active hypometabolic state, called daily torpor when they experience a lowered caloric intake under cold ambient temperature. During torpor, the oxygen consumption rate in some animals drops to less than 30% ...
  • Regulation of Gene Expression for L-Isoaspartyl O-Methyltransferases by Cis-Elements Associated with “Heat-Shock Polytene Chromosome Puffing Formation” in the Anhydrobiotic Midge 
    Deviatiiarov R.; Shagimardanova E.; Kikawada T. (2017)
    © 2016, Springer Science+Business Media New York.L-isoaspartyl O-methyltransferases (PIMTs) are known mostly because of their protein chain reparation activity in plant seeds, but also in many other organisms, from bacteria ...
  • Systematic analysis of transcription start sites in avian development 
    Lizio M.; Deviatiiarov R.; Nagai H.; Galan L.; Arner E.; Itoh M.; Lassmann T.; Kasukawa T.; Hasegawa A.; Ros M.; Hayashizaki Y.; Carninci P.; Forrest A.; Kawaji H.; Gusev O.; Sheng G. (2017)
    © 2017 Lizio et al. Cap Analysis of Gene Expression (CAGE) in combination with single-molecule sequencing technology allows precision mapping of transcription start sites (TSSs) and genome-wide capture of promoter activities ...
  • The complete mitochondrial genome of an anhydrobiotic midge Polypedilum vanderplanki (Chironomidae, Diptera) 
    Deviatiiarov R.; Kikawada T.; Gusev O. (2015)
    © 2015 Taylor & Francis In this work, we describe a complete mitochondrial genome of chironomid Polypedilum vanderplanki. In spite of unique ecology of this species, the larvae are able to survive years of complete ...
  • The complete mitochondrial genome of an anhydrobiotic midge Polypedilum vanderplanki (Chironomidae, Diptera) 
    Deviatiiarov R.; Kikawada T.; Gusev O. (2017)
    © 2015 Informa UK Limited, trading as Taylor & Francis Group.In this work, we describe a complete mitochondrial genome of chironomid Polypedilum vanderplanki. In spite of unique ecology of this species, the larvae are able ...
  • Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery 
    Yamada T.; Suetsugu Y.; Deviatiiarov R.; Gusev O.; Cornette R.; Nesmelov A.; Hiroi N.; Kikawada T.; Funahashi A. (2018)
    © 2018, The Author(s). The larvae of the African midge, Polypedilum vanderplanki, can enter an ametabolic state called anhydrobiosis to overcome fatal desiccation stress. The Pv11 cell line, derived from P. vanderplanki ...

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