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Application of a CAGE method to an avian development study

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dc.contributor.author Deviatiiarov R.
dc.contributor.author Lizio M.
dc.contributor.author Gusev O.
dc.date.accessioned 2018-04-05T07:09:32Z
dc.date.available 2018-04-05T07:09:32Z
dc.date.issued 2017
dc.identifier.issn 1064-3745
dc.identifier.uri http://dspace.kpfu.ru/xmlui/handle/net/129811
dc.description.abstract © Springer Science+Business Media LLC 2017. Cap analysis of gene expression (CAGE) is a convenient approach for genome-wide identification of promoter regions at single base-pair resolution level and accurate expression estimation of the corresponding transcripts. Depending on the initial biomaterial amount and sequencing technology, different computational pipelines for data processing are available, as well as variations of the CAGE protocol that improve sensitivity and accuracy. Therefore, this chapter elucidates the key steps of sample preparation, sequencing, and data analysis via an example of a promoter expression estimation study in chicken development. We also describe the applicability of this approach for studying other avian and reptilian species.
dc.relation.ispartofseries Methods in Molecular Biology
dc.subject Cap analysis gene expression (CAGE)
dc.subject Chicken development
dc.subject FANTOM
dc.subject Promoters
dc.title Application of a CAGE method to an avian development study
dc.type Chapter
dc.relation.ispartofseries-volume 1650
dc.collection Публикации сотрудников КФУ
dc.relation.startpage 101
dc.source.id SCOPUS10643745-2017-1650-SID85027583106


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  • Публикации сотрудников КФУ Scopus [24551]
    Коллекция содержит публикации сотрудников Казанского федерального (до 2010 года Казанского государственного) университета, проиндексированные в БД Scopus, начиная с 1970г.

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