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Просмотр по автору "Alexeev D."

Просмотр по автору "Alexeev D."

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  • Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge 
    Gusev O.; Suetsugu Y.; Cornette R.; Kawashima T.; Logacheva M.; Kondrashov A.; Penin A.; Hatanaka R.; Kikuta S.; Shimura S.; Kanamori H.; Katayose Y.; Matsumoto T.; Shagimardanova E.; Alexeev D.; Govorun V.; Wisecaver J.; Mikheyev A.; Koyanagi R.; Fujie M.; Nishiyama T.; Shigenobu S.; Shibata T.; Golygina V.; Hasebe M.; Okuda T.; Satoh N.; Kikawada T. (2014)
    © 2014 Macmillan Publishers Limited. All rights reserved. Anhydrobiosis represents an extreme example of tolerance adaptation to water loss, where an organism can survive in an ametabolic state until water returns. Here ...
  • Data on gut metagenomes of the patients with alcoholic dependence syndrome and alcoholic liver cirrhosis 
    Tyakht A.; Dubinkina V.; Odintsova V.; Yarygin K.; Kovarsky B.; Pavlenko A.; Ischenko D.; Popenko A.; Alexeev D.; Taraskina A.; Nasyrova R.; Krupitski E.; Shalikiani N.; Bakulin I.; Shcherbakov P.; Skorodumova L.; Larin A.; Kostryukova E.; Abdulkhakov R.; Abdulkhakov S.; Malanin S.; Ismagilova R.; Grigoryeva T.; Ilina E.; Govorun V. (2017)
    © 2017Alcoholism is associated with significant changes in gut microbiota composition. Metagenomic sequencing allows to assess the altered abundance levels of bacterial taxa and genes in a culture-independent way. We ...
  • Genetic diversity of Escherichia coli in gut microbiota of patients with Crohn's disease discovered using metagenomic and genomic analyses 
    Tyakht A.; Manolov A.; Kanygina A.; Ischenko D.; Kovarsky B.; Popenko A.; Pavlenko A.; Elizarova A.; Rakitina D.; Baikova J.; Ladygina V.; Kostryukova E.; Karpova I.; Semashko T.; Larin A.; Grigoryeva T.; Sinyagina M.; Malanin S.; Shcherbakov P.; Kharitonova A.; Khalif I.; Shapina M.; Maev I.; Andreev D.; Belousova E.; Buzunova Y.; Alexeev D.; Govorun V. (2018)
    © 2018 The Author(s). Background: Crohn's disease is associated with gut dysbiosis. Independent studies have shown an increase in the abundance of certain bacterial species, particularly Escherichia coli with the ...
  • Genome analysis of E. coli isolated from Crohn's disease patients 
    Rakitina D.; Manolov A.; Kanygina A.; Garushyants S.; Baikova J.; Alexeev D.; Ladygina V.; Kostryukova E.; Larin A.; Semashko T.; Karpova I.; Babenko V.; Ismagilova R.; Malanin S.; Gelfand M.; Ilina E.; Gorodnichev R.; Lisitsyna E.; Aleshkin G.; Scherbakov P.; Khalif I.; Shapina M.; Maev I.; Andreev D.; Govorun V. (2017)
    © 2017 The Author(s). Background: Escherichia coli (E. coli) has been increasingly implicated in the pathogenesis of Crohn's disease (CD). The phylogeny of E. coli isolated from Crohn's disease patients (CDEC) was ...
  • Gut microbiome signature of Viliuisk encephalomyelitis in Yakuts includes an increase in microbes linked to lean body mass and eating behaviour 
    Kuznetsova V.; Tyakht A.; Akhmadishina L.; Odintsova V.; Klimenko N.; Kostryukova E.; Vakhitova M.; Grigoryeva T.; Malanin S.; Vladimirtsev V.; Nikitina R.; Volok V.; Osakovskiy V.; Sivtseva T.; Platonov F.; Alexeev D.; Karganova G. (2020)
    © 2020, The Author(s). Background: Viliuisk encephalomyelitis (VE) is a rare endemic neurodegenerative disease occurring in the Yakut population of Northeastern Siberia. The main clinical features of VE are spasticity, ...
  • Human gut microbiota community structures in urban and rural populations in Russia 
    Tyakht A.; Kostryukova E.; Popenko A.; Belenikin M.; Pavlenko A.; Larin A.; Karpova I.; Selezneva O.; Semashko T.; Ospanova E.; Babenko V.; Maev I.; Cheremushkin S.; Kucheryavyy Y.; Shcherbakov P.; Grinevich V.; Efimov O.; Sas E.; Abdulkhakov R.; Abdulkhakov S.; Lyalyukova E.; Livzan M.; Vlassov V.; Sagdeev R.; Tsukanov V.; Osipenko M.; Kozlova I.; Tkachev A.; Sergienko V.; Alexeev D.; Govorun V. (2013)
    The microbial community of the human gut has a crucial role in sustaining host homeostasis. High-throughput DNA sequencing has delineated the structural and functional configurations of gut metagenomes in world populations. ...
  • Proteome-metabolome profiling of ovarian cancer ascites reveals novel components involved in intercellular communication 
    Shender V.; Pavlyukov M.; Ziganshin R.; Arapidi G.; Kovalchuk S.; Anikanov N.; Altukhov I.; Alexeev D.; Butenko I.; Shavarda A.; Khomyakova E.; Evtushenko E.; Ashrafyan L.; Antonova I.; Kuznetcov I.; Gorbachev A.; Shakhparonov M.; Govorun V. (2014)
    © 2014 by The American Society for Biochemistry and Molecular Biology, Inc. Ovarian cancer ascites is a native medium for cancer cells that allows investigation of their secretome in a natural environment. This medium is ...
  • RNA-Seq gene expression profiling of HepG2 cells: The influence of experimental factors and comparison with liver tissue 
    Tyakht A.; Ilina E.; Alexeev D.; Ischenko D.; Gorbachev A.; Semashko T.; Larin A.; Selezneva O.; Kostryukova E.; Karalkin P.; Vakhrushev I.; Kurbatov L.; Archakov A.; Govorun V. (2014)
    © Tyakht et al.; licensee BioMed Central. Background: Human hepatoma HepG2 cells are used as an in vitro model of the human liver. High-throughput transcriptomic sequencing is an advanced approach for assessing the functional ...
  • SOD2 gene polymorphism and muscle damage markers in elite athletes 
    Ahmetov I.; Naumov V.; Donnikov A.; Maciejewska-Karłowska A.; Kostryukova E.; Larin A.; Maykova E.; Alexeev D.; Fedotovskaya O.; Generozov E.; Jastrzebski Z.; Zmijewski P.; Kravtsova O.; Kulemin N.; Leonska-Duniec A.; Martykanova D.; Ospanova E.; Pavlenko A.; Podol'skaya A.; Sawczuk M.; Alimova F.; Trofimov D.; Govorun V.; Cieszczyk P. (2014)
    Exercise-induced oxidative stress is a state that primarily occurs in athletes involved in high-intensity sports when pro-oxidants overwhelm the antioxidant defense system to oxidize proteins, lipids, and nucleic acids. ...
  • Transcriptome analysis reveals novel regulatory mechanisms in a genome-reduced bacterium 
    Mazin P.; Fisunov G.; Gorbachev A.; Kapitskaya K.; Altukhov I.; Semashko T.; Alexeev D.; Govorun V. (2014)
    © 2014 The Author(s). The avian bacterial pathogen Mycoplasma gallisepticum is a good model for systems studies due to small genome and simplicity of regulatory pathways. In this study, we used RNA-Seq and MS-based proteomics ...

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