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Browsing by Author "Logacheva M."

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A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling

Klepikova A.; Kasianov A.; Gerasimov E.; Logacheva M.; Penin A. (2016)

© 2016 The Authors The Plant Journal © 2016 John Wiley & Sons LtdArabidopsis thaliana is a long established model species for plant molecular biology, genetics and genomics, and studies of A. thaliana gene function provide ...
Comparative analysis of Illumina and Ion Torrent high-throughput sequencing platforms for identification of plant components in herbal teas

Speranskaya A.; Khafizov K.; Ayginin A.; Krinitsina A.; Omelchenko D.; Nilova M.; Severova E.; Samokhina E.; Shipulin G.; Logacheva M. (2018)

© 2018 Elsevier Ltd The rapid development of high-throughput sequencing (HTS) methods offers new opportunities for food quality control and identification of food components using the DNA barcoding approach (metabarcoding ...
Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives

Logacheva M.; Schelkunov M.; Shtratnikova V.; Matveeva M.; Penin A. (2016)

Although plastid genomes of flowering plants are typically highly conserved regarding their size, gene content and order, there are some exceptions. Ericaceae, a large and diverse family of flowering plants, warrants special ...
Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge

Gusev O.; Suetsugu Y.; Cornette R.; Kawashima T.; Logacheva M.; Kondrashov A.; Penin A.; Hatanaka R.; Kikuta S.; Shimura S.; Kanamori H.; Katayose Y.; Matsumoto T.; Shagimardanova E.; Alexeev D.; Govorun V.; Wisecaver J.; Mikheyev A.; Koyanagi R.; Fujie M.; Nishiyama T.; Shigenobu S.; Shibata T.; Golygina V.; Hasebe M.; Okuda T.; Satoh N.; Kikawada T. (2014)

© 2014 Macmillan Publishers Limited. All rights reserved. Anhydrobiosis represents an extreme example of tolerance adaptation to water loss, where an organism can survive in an ametabolic state until water returns. Here ...
Effect of method of deduplication on estimation of differential gene expression using RNA-seq

Klepikova A.; Kasianov A.; Chesnokov M.; Lazarevich N.; Penin A.; Logacheva M. (2017)

© 2017 Klepikova et al.Background. RNA-seq is a useful tool for analysis of gene expression. However, its robustness is greatly affected by a number of artifacts. One of them is the presence of duplicated reads. Results. ...
Evolution of mitochondrial genomes in Baikalian amphipods

Romanova E.; Aleoshin V.; Kamaltynov R.; Mikhailov K.; Logacheva M.; Sirotinina E.; Gornov A.; Anikin A.; Sherbakov D. (2016)

© 2016 The Author(s).Background: Amphipods (Crustacea) of Lake Baikal are a very numerous and diverse group of invertebrates generally believed to have originated by adaptive radiation. The evolutionary history and ...
Exploring the limits for reduction of plastid genomes: A case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum

Schelkunov M.; Shtratnikova V.; Nuraliev M.; Selosse M.; Penin A.; Logacheva M. (2015)

© The Author(s) 2015. The question on the patterns and limits of reduction of plastid genomes in nonphotosynthetic plants and the reasons of their conservation is one of the intriguing topics in plant genome evolution. ...
High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution

Kasianov A.; Klepikova A.; Kulakovskiy I.; Gerasimov E.; Fedotova A.; Besedina E.; Kondrashov A.; Logacheva M.; Penin A. (2017)

© 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd Polyploidization and subsequent sub- and neofunctionalization of duplicated genes represent a major mechanism of plant genome evolution. Capsella ...
Metagenomics of bolidophyceae in plankton and ice of the White Sea

Belevich T.; Ilyash L.; Milyutina I.; Logacheva M.; Troitsky A. (2017)

© 2017, Pleiades Publishing, Ltd. The molecular diversity of poorly studied algae of Bolidophyceae class was first estimated by Illumina sequencing of V4 region of 18S rRNA gene in ice, under-ice water and summer water of ...
Mitochondrial genomes of kinorhyncha: TrnM duplication and new gene orders within animals

Popova O.; Mikhailov K.; Nikitin M.; Logacheva M.; Penin A.; Muntyan M.; Kedrova O.; Petrov N.; Panchin Y.; Aleoshin V. (2016)

© 2016 Popova et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original ...
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila

Ulianov S.; Doronin S.; Khrameeva E.; Kos P.; Luzhin A.; Starikov S.; Galitsyna A.; Nenasheva V.; Ilyin A.; Flyamer I.; Mikhaleva E.; Logacheva M.; Gelfand M.; Chertovich A.; Gavrilov A.; Razin S.; Shevelyov Y. (2019)

© 2019, The Author(s). How the nuclear lamina (NL) impacts on global chromatin architecture is poorly understood. Here, we show that NL disruption in Drosophila S2 cells leads to chromatin compaction and repositioning from ...
RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

Schelkunov M.; Penin A.; Logacheva M. (2018)

© 2018 The Author(s). Background: While photosynthesis is the most notable trait of plants, several lineages of plants (so-called full heterotrophs) have adapted to obtain organic compounds from other sources. The switch ...
The mitochondrial genome of the moss Brachythecium rivulare (Hypnales, Brachytheciaceae)

Goryunov D.; Logacheva M.; Ignatov M.; Milyutina I.; Fedorova A.; Troitsky A. (2017)

© 2017, Pleiades Publishing, Ltd. The mitochondrial genome of the pleurocarpous moss Brachythecium rivulare has been sequenced and annotated. The genome consists of 104,460 base pairs and has approximately the same gene ...

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Browsing by Author "Logacheva M."

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